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  • Top cofit genes for GFF7192 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2617 no description no 0.70
    2 GFF2543 Uncharacterized membrane protein Bcep18194_A6058 no 0.67
    3 GFF2101 no description no 0.67
    4 GFF3547 no description no 0.66
    5 GFF808 Polyhydroxyalkanoic acid synthase no 0.64
    6 GFF6871 FIG00905613: hypothetical protein no 0.62
    7 GFF4640 hypothetical protein no 0.60
    8 GFF6870 FIG00904791: hypothetical protein no 0.59
    9 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) no 0.58
    10 GFF1792 Transcriptional regulator, IclR family no 0.58
    11 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) no 0.57
    12 GFF273 Transcriptional regulator, Xre family no 0.56
    13 GFF1448 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.56
    14 GFF1520 Transcriptional regulator, IclR family no 0.56
    15 GFF6872 FIG00904907: hypothetical protein no 0.56
    16 GFF683 Transcriptional regulator, LysR family no 0.56
    17 GFF4907 NAD(P) transhydrogenase C-domain of subunit alpha (EC 1.6.1.2) no 0.56
    18 GFF1190 Glycine oxidase ThiO (EC 1.4.3.19) no 0.56
    19 GFF1115 Putative transmembrane protein no 0.56
    20 GFF870 TonB-dependent receptor no 0.55

    Or look for negative cofitness