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  • Top cofit genes for GFF7142 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5340 Efflux ABC transporter, ATP-binding protein 0.48 0.57
    2 GFF5179 Acetyltransferase, GNAT family 0.55 0.54
    3 GFF2134 probable iron-sulfur binding protein YPO1417 no 0.47
    4 GFF4319 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.47
    5 GFF1545 Pyruvate dehydrogenase (quinone) (EC 1.2.5.1) 0.48 0.46
    6 GFF7411 no description no 0.45
    7 GFF4119 no description no 0.44
    8 GFF3472 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) 0.34 0.44
    9 GFF5276 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) no 0.43
    10 GFF6470 TRAP-type C4-dicarboxylate transport system, large permease component no 0.43
    11 GFF4733 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) no 0.42
    12 GFF7319 hypothetical protein no 0.42
    13 GFF6047 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) 0.25 0.42
    14 GFF211 protein of unknown function UPF0125 no 0.41
    15 GFF6825 CaiB/BaiF family protein no 0.41
    16 GFF1490 Transcriptional regulator, LysR family no 0.41
    17 GFF2119 Type IV fimbrial biogenesis protein PilW no 0.41
    18 GFF4521 Guanine deaminase (EC 3.5.4.3) no 0.40
    19 GFF2697 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.40
    20 GFF5662 no description no 0.40

    Or look for negative cofitness