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  • Top cofit genes for GFF7100 from Variovorax sp. SCN45

    similar to protocatechuate 4,5-dioxygenase beta chain
    SEED: similar to protocatechuate 4,5-dioxygenase beta chain
    KEGG: 2,3-dihydroxyphenylpropionate 1,2-dioxygenase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4544 RNA polymerase sigma factor RpoE no 0.61
    2 GFF652 bacteriophytochrome heme oxygenase BphO no 0.56
    3 GFF3937 Transcriptional regulator, AraC family no 0.55
    4 GFF1152 Lysine decarboxylase family no 0.53
    5 GFF293 no description no 0.52
    6 GFF4223 BUG/TctC family periplasmic protein no 0.51
    7 GFF2076 Alkyl sulfatase and related hydrolases, MBL-fold metallo-hydrolase superfamily no 0.51
    8 GFF6720 no description no 0.51
    9 GFF2416 Transcriptional regulator YbhD, LysR family no 0.50
    10 GFF5858 heme uptake regulator no 0.50
    11 GFF2212 KEGG: prepilin peptidase CpaA no 0.50
    12 GFF494 RND efflux system, membrane fusion protein no 0.50
    13 GFF5107 Transcriptional regulator, LysR family no 0.50
    14 GFF1317 no description no 0.49
    15 GFF3506 Superoxide dismutase [Fe] (EC 1.15.1.1) no 0.49
    16 GFF1497 BUG/TctC family periplasmic protein no 0.48
    17 GFF5053 Uncharacterized protein SPO0681 no 0.48
    18 GFF4433 1,6-anhydro-N-acetylmuramyl-L-alanine amidase no 0.47
    19 GFF2098 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.47
    20 GFF2941 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) no 0.47

    Or look for negative cofitness