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  • Top cofit genes for GFF7053 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6153 Transcriptional activator of acetoin/glycerol metabolism no 0.54
    2 GFF1023 UPF0311 protein RPA1785 no 0.52
    3 GFF1313 Cellulose synthase operon protein C no 0.52
    4 GFF958 ElaB protein no 0.50
    5 GFF3863 RNA polymerase sigma factor RpoE no 0.50
    6 GFF7189 dioxygenase, TauD/TfdA family no 0.49
    7 GFF7139 MATE efflux family protein no 0.47
    8 GFF5855 T1SS secreted agglutinin RTX no 0.47
    9 GFF3794 hypothetical protein no 0.47
    10 GFF5000 PUTATIVE ZINC PROTEASE PROTEIN no 0.47
    11 GFF4403 Mobile element protein no 0.47
    12 GFF2914 Glutamine ABC transporter, ATP-binding protein GlnQ no 0.47
    13 GFF1316 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) no 0.47
    14 GFF3666 Inner membrane protein YbiR, putative anion permease no 0.46
    15 GFF794 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.46
    16 GFF1115 Putative transmembrane protein no 0.46
    17 GFF5290 hypothetical protein no 0.45
    18 GFF4459 Acyl-CoA:1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) no 0.45
    19 GFF4238 no description no 0.45
    20 GFF2560 FIG00932643: hypothetical protein no 0.45

    Or look for negative cofitness