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  • Top cofit genes for GFF7020 from Variovorax sp. SCN45

    ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)
    SEED: Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF21 no description no 0.71
    2 GFF6891 Phenazine biosynthesis protein PhzF like no 0.69
    3 GFF5965 hypothetical protein no 0.63
    4 GFF1711 DUF3701 domain / Site-specific tyrosine recombinase no 0.61
    5 GFF7364 no description no 0.60
    6 GFF6030 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.60
    7 GFF398 Putative oxidoreductase no 0.60
    8 GFF6349 no description no 0.59
    9 GFF7363 hypothetical protein no 0.59
    10 GFF7266 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) no 0.58
    11 GFF6853 Putative transmembrane sensor 0.30 0.58
    12 GFF128 hypothetical protein no 0.58
    13 GFF2567 Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80) no 0.58
    14 GFF6997 Flagellar basal-body rod protein FlgC no 0.57
    15 GFF1187 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) no 0.57
    16 GFF299 Ribosomal silencing factor RsfA no 0.57
    17 GFF2367 Transcriptional regulator, LysR family no 0.56
    18 GFF1098 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) no 0.56
    19 GFF2844 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) no 0.56
    20 GFF2383 Oxygen-independent coproporphyrinogen-III oxidase-like protein YggW no 0.56

    Or look for negative cofitness