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  • Top cofit genes for GFF6939 from Variovorax sp. SCN45

    ABC-type antimicrobial peptide transport system, permease component
    SEED: ABC transporter, permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4671 putative membrane protein no 0.63
    2 GFF5927 3-oxoacyl-[ACP] synthase no 0.55
    3 GFF6104 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.55
    4 GFF5107 Transcriptional regulator, LysR family no 0.55
    5 GFF6366 T6SS component TssG (ImpH/VasB) no 0.54
    6 GFF6217 hypothetical protein no 0.53
    7 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.52
    8 GFF5585 Transcriptional regulator, MarR family no 0.52
    9 GFF785 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system no 0.52
    10 GFF4506 hypothetical protein no 0.51
    11 GFF5682 TRAP-type transport system, periplasmic component no 0.51
    12 GFF6573 Conjugative transfer protein TrbF no 0.50
    13 GFF5043 ABC transporter, permease protein (cluster 9, phospholipid) no 0.50
    14 GFF5602 FIG00348944: hypothetical protein no 0.49
    15 GFF1177 Serine protease 0.24 0.49
    16 GFF4928 hypothetical protein no 0.49
    17 GFF842 hypothetical protein no 0.49
    18 GFF2263 putative membrane protein no 0.48
    19 GFF427 no description no 0.47
    20 GFF2774 Auxin efflux carrier family protein no 0.47

    Or look for negative cofitness