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  • Top cofit genes for GFF6903 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6980 Mobile element protein no 0.57
    2 GFF5936 T6SS AAA+ chaperone ClpV (TssH) 0.61 0.55
    3 GFF958 ElaB protein no 0.52
    4 GFF7251 Mobile element protein no 0.51
    5 GFF5851 TPR repeat no 0.50
    6 GFF3772 Arginase (EC 3.5.3.1) 0.43 0.49
    7 GFF1330 UPF0061 protein YdiU no 0.48
    8 GFF3109 Methionine ABC transporter substrate-binding protein no 0.48
    9 GFF6706 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) no 0.48
    10 GFF267 no description no 0.48
    11 GFF3207 hypothetical protein no 0.47
    12 GFF2125 hypothetical protein no 0.47
    13 GFF6849 MotA/TolQ/ExbB proton channel family protein no 0.47
    14 GFF5458 D-erythronate dehydrogenase (NAD+) 0.33 0.47
    15 GFF4046 Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA no 0.47
    16 GFF2001 Putative phosphatase YieH no 0.47
    17 GFF1251 FMNH2-dependent alkanesulfonate monooxygenase (EC 1.14.14.5) no 0.47
    18 GFF89 hypothetical protein no 0.46
    19 GFF4534 Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like no 0.46
    20 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) no 0.45

    Or look for negative cofitness