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  • Top cofit genes for GFF685 from Variovorax sp. SCN45

    Tricarboxylate transport protein TctC
    SEED: Tricarboxylate transport protein TctC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6583 Transcriptional regulator, LysR family no 0.60
    2 GFF5736 Flagellar hook-associated protein FlgL no 0.57
    3 GFF585 no description no 0.57
    4 GFF7389 Cyclohexanone monooxygenase (EC 1.14.13.22) no 0.56
    5 GFF5055 BUG/TctC family periplasmic protein no 0.55
    6 GFF4558 RNA polymerase ECF-type sigma factor no 0.54
    7 GFF6459 Two-component transcriptional regulatory protein BasR/PmrA (activated by BasS/PmrB) no 0.52
    8 GFF2739 Putative SAM-dependent methyltransferase Bucepa02006346 no 0.52
    9 GFF6997 Flagellar basal-body rod protein FlgC no 0.50
    10 GFF7198 Predicted metal-dependent hydrolase of the TIM-barrel fold no 0.50
    11 GFF5716 Flagellar basal-body rod protein FlgC no 0.50
    12 GFF2080 Protein acetyltransferase no 0.49
    13 GFF6045 FIG00932121: hypothetical protein no 0.48
    14 GFF838 hypothetical protein no 0.48
    15 GFF2551 Endonuclease/exonuclease/phosphatase no 0.47
    16 GFF5263 Ferric iron ABC transporter, permease protein no 0.47
    17 GFF6774 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) no 0.47
    18 GFF1692 Two-component system sensor histidine kinase no 0.47
    19 GFF5136 Putative DNA helicase no 0.47
    20 GFF1868 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.47

    Or look for negative cofitness