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  • Top cofit genes for GFF683 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Glycine cleavage system transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5158 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) no 0.67
    2 GFF943 Intracellular PHB depolymerase no 0.67
    3 GFF1155 Putative transmembrane protein no 0.67
    4 GFF6871 FIG00905613: hypothetical protein 0.38 0.66
    5 GFF808 Polyhydroxyalkanoic acid synthase no 0.66
    6 GFF966 Probable two-component transmembrane sensor histidine kinase transcription regulator protein (EC 2.7.3.-) no 0.64
    7 GFF168 MCP methyltransferase, CheR-type no 0.63
    8 GFF302 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) no 0.63
    9 GFF6870 FIG00904791: hypothetical protein no 0.62
    10 GFF3462 Urea ABC transporter, permease protein UrtC no 0.62
    11 GFF4650 Transcriptional regulator, PadR family no 0.62
    12 GFF6410 Histidine utilization repressor no 0.62
    13 GFF4977 Transcriptional regulator for ferulate or vanillate catabolism no 0.61
    14 GFF6087 Transcriptional regulator, AcrR family no 0.61
    15 GFF6591 Transcriptional regulator, GntR family no 0.61
    16 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) no 0.61
    17 GFF4893 FIG00640418: hypothetical protein no 0.60
    18 GFF1792 Transcriptional regulator, IclR family no 0.60
    19 GFF2543 Uncharacterized membrane protein Bcep18194_A6058 no 0.60
    20 GFF3089 Amidophosphoribosyltransferase (EC 2.4.2.14) no 0.60

    Or look for negative cofitness