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  • Top cofit genes for PS417_03465 from Pseudomonas simiae WCS417

    type III secretion protein
    SEED: type III secretion protein HrpQ

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_05580 glycerol uptake facilitator GlpF 0.31 0.22
    2 PS417_12255 hypothetical protein no 0.22
    3 PS417_21560 flagellar basal body rod modification protein FlgD no 0.21
    4 PS417_20580 isocitrate dehydrogenase no 0.21
    5 PS417_15495 FAD-dependent oxidoreductase no 0.21
    6 PS417_27990 hypothetical protein no 0.21
    7 PS417_10040 MFS transporter no 0.20
    8 PS417_19790 ATP synthase no 0.20
    9 PS417_05575 Glycerol kinase (EC 2.7.1.30) (from data) 0.35 0.19
    10 PS417_27395 amino acid ABC transporter permease no 0.19
    11 PS417_19850 branched-chain alpha-keto acid dehydrogenase subunit E2 no 0.19
    12 PS417_21555 flagellar hook protein FlgE no 0.19
    13 PS417_19690 histidine kinase no 0.19
    14 PS417_25045 hypothetical protein no 0.19
    15 PS417_21990 LacI family transcriptional regulator no 0.19
    16 PS417_18480 permease no 0.18
    17 PS417_05635 membrane protein 0.75 0.18
    18 PS417_05925 spermidine/putrescine ABC transporter permease no 0.18
    19 PS417_21585 flagellar basal body P-ring biosynthesis protein FlgA no 0.18
    20 PS417_19730 flagellar biosynthesis protein FliR no 0.18

    Or look for negative cofitness