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  • Top cofit genes for GFF681 from Variovorax sp. SCN45

    Hypothetical protein in cluster with At3g50560-like gene family
    SEED: Hypothetical protein in cluster with At3g50560-like gene family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1811 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.56
    2 GFF4730 hypothetical protein no 0.56
    3 GFF4815 Glucose-fructose oxidoreductase (EC 1.1.99.28) no 0.54
    4 GFF4703 Xylitol dehydrogenase (EC 1.1.1.9) no 0.54
    5 GFF1630 Esterase/lipase no 0.54
    6 GFF2487 Two-component system sensor histidine kinase/response regulator hybrid no 0.54
    7 GFF566 Type IV fimbrial biogenesis protein PilV no 0.52
    8 GFF4503 RNA polymerase sigma factor no 0.51
    9 GFF4321 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.51
    10 GFF3849 Iron-sulfur cluster-binding protein, Rieske family no 0.51
    11 GFF2483 Urease alpha subunit (EC 3.5.1.5) no 0.50
    12 GFF5190 L-arabinose 1-dehydrogenase (EC 1.1.1.376) no 0.50
    13 GFF2972 Radical SAM domain protein no 0.49
    14 GFF2287 ortholog of Bordetella pertussis (BX470248) BP3300 no 0.48
    15 GFF7360 Urea ABC transporter, substrate-binding protein UrtA no 0.48
    16 GFF6366 T6SS component TssG (ImpH/VasB) no 0.47
    17 GFF2448 Acyl-CoA dehydrogenase no 0.47
    18 GFF504 SAM-dependent methyltransferases no 0.47
    19 GFF4925 ATPase component BioM of energizing module of biotin ECF transporter no 0.47
    20 GFF3833 FIG01056426: hypothetical protein no 0.46

    Or look for negative cofitness