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  • Top cofit genes for GFF6798 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    SEED: Putative amino acid ABC transporter, permease protein
    KEGG: polar amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6834 no description no 0.62
    2 GFF849 putative carboxylesterase no 0.60
    3 GFF3541 hypothetical protein no 0.58
    4 GFF2530 ABC transporter, substrate-binding protein PA3836 no 0.58
    5 GFF1801 Transcriptional regulator, LysR family no 0.56
    6 GFF483 Fumarate hydratase class I, aerobic (EC 4.2.1.2) 0.27 0.56
    7 GFF2366 Tricarboxylate transport protein TctC 0.34 0.55
    8 GFF78 Cytochrome c family protein no 0.54
    9 GFF1273 no description no 0.53
    10 GFF6575 Conjugative transfer protein TrbJ no 0.53
    11 GFF2541 FIG00899427: hypothetical protein 0.28 0.53
    12 GFF2144 tRNA-dihydrouridine synthase DusB no 0.52
    13 GFF3979 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-) no 0.52
    14 GFF4510 hypothetical protein no 0.52
    15 GFF7170 D-malate dehydrogenase [decarboxylating] (EC 1.1.1.83) 0.32 0.51
    16 GFF6891 Phenazine biosynthesis protein PhzF like no 0.51
    17 GFF17 hypothetical protein no 0.51
    18 GFF203 hypothetical protein no 0.51
    19 GFF7390 Aldehyde dehydrogenase (EC 1.2.1.3) 0.27 0.51
    20 GFF2 Transcription accessory protein (S1 RNA-binding domain) no 0.51

    Or look for negative cofitness