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  • Top cofit genes for GFF6764 from Variovorax sp. SCN45

    Transcriptional regulator, MarR family
    SEED: Transcriptional regulator, MarR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6480 hypothetical protein no 0.63
    2 GFF1096 Phosphate transport system regulatory protein PhoU 0.43 0.61
    3 GFF1683 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) no 0.60
    4 GFF2281 Short-chain dehydrogenase/reductase SDR 0.27 0.59
    5 GFF680 RecA/RadA recombinase no 0.55
    6 GFF7087 oxidoreductase FAD/NAD(P)-binding domain protein no 0.55
    7 GFF5390 RecA protein 0.31 0.54
    8 GFF1049 low-specificity D-threonine aldolase no 0.54
    9 GFF3518 no description no 0.54
    10 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) no 0.54
    11 GFF7043 Putative transmembrane protein no 0.54
    12 GFF4980 Transcriptional regulator, AsnC family 0.20 0.53
    13 GFF1484 Transcriptional regulator, LysR family no 0.53
    14 GFF1675 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.52
    15 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.52 0.52
    16 GFF2381 Ribonuclease PH (EC 2.7.7.56) 0.41 0.51
    17 GFF5715 Flagellar basal-body rod protein FlgB no 0.51
    18 GFF3525 Protein tyrosine/serine phosphatase no 0.51
    19 GFF4148 hypothetical protein no 0.51
    20 GFF6097 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149) no 0.51

    Or look for negative cofitness