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  • Top cofit genes for GFF6713 from Variovorax sp. SCN45

    ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines)
    SEED: Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)
    KEGG: peptide/nickel transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1403 MATE efflux family protein no 0.56
    2 GFF5552 MaoC domain protein dehydratase no 0.53
    3 GFF1700 hypothetical protein no 0.52
    4 GFF2494 Threonine-synthase-like protein 4 no 0.49
    5 GFF3565 Acyl-CoA dehydrogenase no 0.48
    6 GFF3542 hypothetical protein no 0.47
    7 GFF4861 Butyryl-CoA dehydrogenase (EC 1.3.8.1) no 0.46
    8 GFF6575 Conjugative transfer protein TrbJ no 0.46
    9 GFF6579 Conjugative transfer protein TrbB no 0.46
    10 GFF4886 hypothetical protein no 0.45
    11 GFF3273 Translation initiation factor 2 no 0.45
    12 GFF4736 Nitrate ABC transporter, permease protein no 0.45
    13 GFF1837 Transcriptional regulator, LysR family 0.27 0.45
    14 GFF2416 Transcriptional regulator YbhD, LysR family no 0.44
    15 GFF3081 no description no 0.44
    16 GFF3258 hypothetical protein no 0.43
    17 GFF3661 Putative oxidoreductase YncB no 0.43
    18 GFF5725 Methyl-accepting chemotaxis sensor/transducer protein no 0.43
    19 GFF5053 Uncharacterized protein SPO0681 no 0.43
    20 GFF5825 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.42

    Or look for negative cofitness