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  • Top cofit genes for GFF6711 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5154 DNA-binding transcriptional regulator, MocR family / aminotransferase domain no 0.56
    2 GFF2256 Uncharacterized protein YcgL no 0.55
    3 GFF6536 protein of unknown function DUF1345 no 0.54
    4 GFF6698 ClpXP protease specificity-enhancing factor SspB no 0.53
    5 GFF3990 hypothetical protein no 0.53
    6 GFF3249 Guanyl-specific ribonuclease (EC 3.1.27.3) no 0.52
    7 GFF253 Transcriptional regulator, LysR family no 0.51
    8 GFF5067 Transcriptional regulator, LysR family no 0.50
    9 GFF4553 RNA chaperone ProQ no 0.50
    10 GFF1064 Transcriptional regulator, GntR family no 0.50
    11 GFF1682 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.50
    12 GFF5434 FIG097052: Sugar transporter no 0.50
    13 GFF4618 Hexuronate utilization operon transcriptional repressor ExuR no 0.50
    14 GFF4975 Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1) no 0.49
    15 GFF3001 Metal chaperone, involved in Zn homeostasis no 0.49
    16 GFF4846 Conjugative transfer protein TrbE no 0.49
    17 GFF3078 SAM-dependent methyltransferase no 0.49
    18 GFF1512 no description no 0.49
    19 GFF4566 hypothetical protein no 0.48
    20 GFF7259 no description no 0.48

    Or look for negative cofitness