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  • Top cofit genes for GFF67 from Variovorax sp. SCN45

    Glycosyl transferase, group 1
    SEED: Colanic acid biosysnthesis glycosyl transferase WcaI
    KEGG: colanic acid biosynthesis glycosyl transferase WcaI

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6417 BUG/TctC family periplasmic protein no 0.49
    2 GFF115 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.48
    3 GFF5392 no description no 0.48
    4 GFF7299 MotA/TolQ/ExbB proton channel family protein no 0.48
    5 GFF6808 Peroxiredoxin OsmC (EC 1.11.1.15) no 0.47
    6 GFF3009 NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.45
    7 GFF3962 Opine dehydrogenase (EC 1.5.1.28) no 0.43
    8 GFF555 Putative inner membrane protein no 0.43
    9 GFF7067 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.41
    10 GFF3458 Rubisco activation protein CbbQ no 0.41
    11 GFF4948 ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) no 0.41
    12 GFF5268 protein of unknown function DUF805 no 0.41
    13 GFF336 no description no 0.41
    14 GFF6596 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE no 0.41
    15 GFF5806 RNA polymerase ECF-type sigma factor no 0.40
    16 GFF562 Type IV pilus biogenesis protein PilE 0.37 0.40
    17 GFF812 Putative reductase no 0.40
    18 GFF4365 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) no 0.40
    19 GFF7304 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) 0.44 0.40
    20 GFF6390 GtrA-like protein no 0.40

    Or look for negative cofitness