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  • Top cofit genes for GFF6684 from Variovorax sp. SCN45

    ABC transporter, ATP-binding protein
    SEED: probable ABC transporter ATP-binding protein
    KEGG: ABC-2 type transport system ATP-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5240 General secretion pathway protein K no 0.59
    2 GFF4812 no description no 0.59
    3 GFF7139 MATE efflux family protein no 0.55
    4 GFF864 no description no 0.55
    5 GFF1701 BUG/TctC family periplasmic protein no 0.55
    6 GFF42 hypothetical protein no 0.52
    7 GFF4008 Transcriptional regulator, LysR family no 0.51
    8 GFF1632 RNA polymerase ECF-type sigma factor no 0.51
    9 GFF3487 InterPro IPR005806 COGs COG2146 no 0.51
    10 GFF1208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.51
    11 GFF1306 no description no 0.51
    12 GFF5983 Transcriptional regulator, LysR family no 0.51
    13 GFF3468 Nucleoside-diphosphate-sugar epimerases no 0.51
    14 GFF6373 T6SS component TssA (ImpA) no 0.51
    15 GFF247 ATP-dependent helicase HrpA no 0.51
    16 GFF3556 BUG/TctC family periplasmic protein no 0.50
    17 GFF7279 no description no 0.50
    18 GFF6276 Uncharacterized MFS-type transporter no 0.49
    19 GFF3085 no description no 0.49
    20 GFF1433 hypothetical protein no 0.49

    Or look for negative cofitness