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  • Top cofit genes for GFF6657 from Variovorax sp. SCN45

    Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system
    SEED: Outer membrane component of tripartite multidrug resistance system

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF178 Mannonate dehydratase (EC 4.2.1.8) no 0.66
    2 GFF6195 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.65
    3 GFF2934 FIG002076: hypothetical protein no 0.64
    4 GFF6884 FIG00932717: hypothetical protein 0.32 0.64
    5 GFF4129 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.63
    6 GFF3546 Chaperone protein HtpG no 0.62
    7 GFF4635 Transketolase, N-terminal section (EC 2.2.1.1) no 0.61
    8 GFF2160 Aspartate carbamoyltransferase (EC 2.1.3.2) no 0.60
    9 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) no 0.60
    10 GFF1192 no description no 0.60
    11 GFF6190 3-hydroxyisobutyrate dehydrogenase family protein no 0.60
    12 GFF6606 no description no 0.59
    13 GFF1029 CHRD domain containing protein no 0.59
    14 GFF665 hypothetical protein no 0.59
    15 GFF932 Acetyltransferase, GNAT family no 0.59
    16 GFF5260 Uncharacterized protein ygiD no 0.59
    17 GFF1139 Domain of unknown function / Efflux ABC transporter, permease protein no 0.58
    18 GFF6033 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) no 0.58
    19 GFF6297 Putative transmembrane protein no 0.58
    20 GFF2196 no description no 0.58

    Or look for negative cofitness