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  • Top cofit genes for GFF6615 from Variovorax sp. SCN45

    putative plasmid stabilization protein
    SEED: putative plasmid stabilization protein
    KEGG: chromosome partitioning protein, ParB family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF668 Transcriptional regulator, LysR family no 0.56
    2 GFF153 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) no 0.56
    3 GFF4995 no description no 0.56
    4 GFF1597 Acetolactate synthase large subunit (EC 2.2.1.6) no 0.53
    5 GFF4268 Uncharacterized MFS-type transporter no 0.52
    6 GFF3581 Transcriptional regulator, ArsR family no 0.52
    7 GFF3144 hypothetical protein no 0.51
    8 GFF2920 TRAP-type C4-dicarboxylate transport system, large permease component no 0.50
    9 GFF4209 no description no 0.50
    10 GFF6508 hypothetical protein no 0.49
    11 GFF2747 17 kDa surface antigen no 0.49
    12 GFF5848 Flagellar motor protein no 0.49
    13 GFF3509 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system no 0.49
    14 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) no 0.49
    15 GFF5386 hypothetical protein no 0.48
    16 GFF6859 Two-component transcriptional response regulator, OmpR family no 0.48
    17 GFF7212 Nitrilotriacetate monooxygenase [FMNH2] no 0.47
    18 GFF5765 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) no 0.47
    19 GFF5921 T6SS protein serine/threonine phosphatase PppA no 0.47
    20 GFF6854 RNA polymerase ECF-type sigma factor no 0.47

    Or look for negative cofitness