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  • Top cofit genes for GFF6602 from Variovorax sp. SCN45

    Type IV secretory pathway, protease TraF
    SEED: Type IV secretory pathway, protease TraF

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5918 T6SS component TssC (ImpC/VipB) no 0.56
    2 GFF2556 UPF0337 family protein no 0.51
    3 GFF4321 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.51
    4 GFF7133 Catalase-like heme-binding protein no 0.50
    5 GFF4102 N-methylhydantoinase B (EC 3.5.2.14) no 0.49
    6 GFF2642 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.49
    7 GFF566 Type IV fimbrial biogenesis protein PilV no 0.48
    8 GFF5044 ABC transporter, ATP-binding protein (cluster 9, phospholipid) no 0.47
    9 GFF1617 Phosphonate uptake and metabolism regulator, LysR-family no 0.47
    10 GFF666 no description no 0.47
    11 GFF332 hypothetical protein no 0.47
    12 GFF3117 Beta-phosphoglucomutase (EC 5.4.2.6) no 0.47
    13 GFF7182 no description no 0.47
    14 GFF5772 Flagellar biosynthesis protein FlhF no 0.47
    15 GFF7201 Alkanesulfonates transport system permease protein no 0.47
    16 GFF3603 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) no 0.46
    17 GFF1998 Two-component system sensor histidine kinase no 0.46
    18 GFF3865 Sigma factor RpoE negative regulatory protein RseB precursor no 0.46
    19 GFF2487 Two-component system sensor histidine kinase/response regulator hybrid no 0.46
    20 GFF6090 Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI) no 0.46

    Or look for negative cofitness