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  • Top cofit genes for GFF6574 from Variovorax sp. SCN45

    Conjugative transfer protein TrbL
    SEED: Conjugative transfer protein TrbL
    KEGG: type IV secretion system protein TrbL

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6080 Putative deoxyribonuclease YjjV no 0.57
    2 GFF287 hypothetical protein no 0.56
    3 GFF5299 TonB-dependent receptor no 0.54
    4 GFF813 Transcriptional regulator PA0877, LysR family no 0.53
    5 GFF6982 hypothetical protein no 0.52
    6 GFF3307 FIG01161751: hypothetical protein no 0.52
    7 GFF623 Demethylmenaquinone methyltransferase-like protein no 0.52
    8 GFF5981 COGs COG3558 no 0.52
    9 GFF4298 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase no 0.51
    10 GFF6822 Peptidase C14, caspase catalytic subunit p20 no 0.51
    11 GFF6778 possible endonuclease/exonuclease/phosphatase family protein no 0.50
    12 GFF6757 no description no 0.50
    13 GFF3182 Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069 no 0.49
    14 GFF6446 Xaa-Pro aminopeptidase (EC 3.4.11.9) no 0.48
    15 GFF2946 Regulator of competence-specific genes no 0.48
    16 GFF3557 hypothetical protein no 0.48
    17 GFF5011 Geranyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.5) no 0.48
    18 GFF1648 Ligand-binding SRPBCC domain protein family no 0.47
    19 GFF4858 Transposase no 0.47
    20 GFF4818 Hydroxymethylpyrimidine ABC transporter, substrate-binding component no 0.47

    Or look for negative cofitness