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  • Top cofit genes for GFF6572 from Variovorax sp. SCN45

    Conjugative transfer protein TrbG
    SEED: Conjugative transfer protein TrbG
    KEGG: type IV secretion system protein VirB9

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2157 UPF0301 protein YqgE no 0.53
    2 GFF7246 HtrA protease/chaperone protein no 0.52
    3 GFF2264 Transcriptional regulator, LysR family no 0.51
    4 GFF2469 hypothetical protein no 0.51
    5 GFF4928 hypothetical protein no 0.49
    6 GFF1379 Uncharacterized MFS-type transporter no 0.49
    7 GFF3768 no description no 0.48
    8 GFF3798 FIG00932573: hypothetical protein no 0.48
    9 GFF5135 DNA repair exonuclease family protein YhaO no 0.48
    10 GFF906 Transcriptional regulator no 0.47
    11 GFF5818 Two-component transcriptional response regulator, NarL/FixJ family no 0.47
    12 GFF2256 Uncharacterized protein YcgL no 0.47
    13 GFF7247 no description no 0.47
    14 GFF3111 hypothetical protein no 0.46
    15 GFF2536 Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) no 0.46
    16 GFF4546 Permease of the drug/metabolite transporter (DMT) superfamily no 0.46
    17 GFF4136 hypothetical protein no 0.46
    18 GFF4868 Type IV secretory pathway, VirD2 components (relaxase) no 0.45
    19 GFF3574 hypothetical protein no 0.45
    20 GFF2020 BUG/TctC family periplasmic protein no 0.45

    Or look for negative cofitness