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  • Top cofit genes for GFF6562 from Variovorax sp. SCN45

    T1SS secreted agglutinin RTX
    SEED: T1SS secreted agglutinin RTX

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6319 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.62
    2 GFF3698 ATP-dependent, 3'-5' DNA helicase with strand annealing activity no 0.60
    3 GFF4396 Mobile element protein no 0.59
    4 GFF5455 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) no 0.58
    5 GFF6746 dolichyl-phosphate-mannose-protein mannosyltransferase family protein no 0.58
    6 GFF7243 HtrA protease/chaperone protein no 0.57
    7 GFF5295 Ferrichrome-iron receptor no 0.57
    8 GFF7302 Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21) no 0.57
    9 GFF2828 Uncharacterized protein CC_3059 no 0.56
    10 GFF6173 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B no 0.56
    11 GFF5409 FIG00576366: hypothetical protein no 0.55
    12 GFF3179 hypothetical protein no 0.54
    13 GFF5496 BUG/TctC family periplasmic protein no 0.54
    14 GFF3560 hypothetical protein no 0.54
    15 GFF4955 hypothetical protein no 0.54
    16 GFF2197 Type I secretion system ATPase, LssB family LapB no 0.53
    17 GFF6424 Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32) no 0.53
    18 GFF5668 Uncharacterized MFS-type transporter no 0.53
    19 GFF6219 hypothetical protein no 0.52
    20 GFF304 Ubiquinone/menaquinone biosynthesis methyltransferase family protein no 0.52

    Or look for negative cofitness