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  • Top cofit genes for GFF654 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines)
    SEED: probable extracellular solute-binding protein
    KEGG: polar amino acid transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3073 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) no 0.60
    2 GFF1646 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching no 0.57
    3 GFF1672 BUG/TctC family periplasmic protein no 0.55
    4 GFF2717 Epimerase KguE no 0.53
    5 GFF6430 L-carnitine dehydratase/bile acid-inducible protein F no 0.50
    6 GFF3563 L-carnitine dehydratase/bile acid-inducible protein F no 0.49
    7 GFF5778 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.49
    8 GFF7167 Pirin no 0.49
    9 GFF4504 FIG00953527: hypothetical protein no 0.48
    10 GFF4430 hypothetical protein no 0.48
    11 GFF5942 hypothetical protein no 0.48
    12 GFF3573 Efflux ABC transporter, ATP-binding protein no 0.47
    13 GFF3781 Transcriptional regulator, AcrR family no 0.47
    14 GFF1734 no description no 0.47
    15 GFF1216 Isoaspartyl aminopeptidase (EC 3.4.19.5) @ Asp-X dipeptidase no 0.47
    16 GFF1416 no description no 0.46
    17 GFF1886 Elongation factor G-like protein TM_1651 no 0.46
    18 GFF4150 Salicylate hydroxylase (EC 1.14.13.1) no 0.46
    19 GFF1587 no description no 0.46
    20 GFF3594 no description no 0.45

    Or look for negative cofitness