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  • Top cofit genes for GFF6534 from Variovorax sp. SCN45

    Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
    SEED: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
    KEGG: methylated-DNA-[protein]-cysteine S-methyltransferase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1611 no description no 0.58
    2 GFF7309 Transcriptional regulator, LysR family no 0.55
    3 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.41 0.54
    4 GFF4851 Coupling protein VirD4, ATPase required for T-DNA transfer no 0.54
    5 GFF675 KEGG: 2'-5' RNA ligase no 0.54
    6 GFF929 Transcriptional regulator, IclR family no 0.53
    7 GFF2680 Protein of unknown function DUF1058 no 0.53
    8 GFF2935 FIG004684: SpoVR-like protein no 0.52
    9 GFF1775 no description no 0.51
    10 GFF1524 FIG006045: Sigma factor, ECF subfamily no 0.51
    11 GFF5423 FIG00537205: hypothetical protein no 0.51
    12 GFF6355 T6SS secretion lipoprotein TssJ (VasD) no 0.51
    13 GFF2772 Site-specific tyrosine recombinase XerD no 0.50
    14 GFF1332 no description no 0.50
    15 GFF7033 protein of unknown function DUF427 no 0.50
    16 GFF4634 Transketolase, C-terminal section (EC 2.2.1.1) no 0.50
    17 GFF3302 no description no 0.50
    18 GFF2340 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.50
    19 GFF5546 Lactam utilization protein LamB no 0.49
    20 GFF3848 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C no 0.49

    Or look for negative cofitness