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  • Top cofit genes for GFF6500 from Variovorax sp. SCN45

    2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain
    SEED: 2-hydroxychromene-2-carboxylate isomerase/DsbA-like thioredoxin domain

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4660 hypothetical protein no 0.50
    2 GFF252 Zinc-type alcohol dehydrogenase-like protein no 0.44
    3 GFF1777 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.43
    4 GFF3864 Sigma factor RpoE negative regulatory protein RseA no 0.43
    5 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.47 0.43
    6 GFF3836 Cyclic beta-1,2-glucan synthase (EC 2.4.1.-) no 0.42
    7 GFF2944 Acetyltransferase no 0.41
    8 GFF3548 hypothetical protein no 0.40
    9 GFF3822 RND efflux system, membrane fusion protein no 0.40
    10 GFF5092 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) no 0.40
    11 GFF6679 hypothetical protein no 0.39
    12 GFF596 no description no 0.39
    13 GFF4657 hypothetical protein no 0.39
    14 GFF2247 hypothetical protein no 0.39
    15 GFF2823 Hemin transport protein HmuS no 0.39
    16 GFF635 Urea ABC transporter, permease protein UrtB no 0.38
    17 GFF3480 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.38
    18 GFF1174 Transcriptional regulator, IclR family no 0.38
    19 GFF2969 acyl-CoA synthetase (NDP forming type) no 0.38
    20 GFF1985 Zinc metalloprotease 0.35 0.38

    Or look for negative cofitness