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  • Top cofit genes for GFF642 from Variovorax sp. SCN45

    Membrane protease family protein BA0301
    SEED: Membrane protease family protein BA0301

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4439 Probable transmembrane protein no 0.63
    2 GFF785 Sigma factor regulator VreR (cytoplasmic membrane-localized) of trans-envelope signaling system no 0.59
    3 GFF3486 glutamine synthetase family protein no 0.58
    4 GFF3743 Twitching motility protein PilT no 0.58
    5 GFF1941 hypothetical protein no 0.57
    6 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) no 0.56
    7 GFF2519 FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) no 0.55
    8 GFF1631 L-lysine 6-monooxygenase (Lysine N(6)-hydroxylase) protein no 0.55
    9 GFF767 Alpha-amylase (EC 3.2.1.1) no 0.55
    10 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.83 0.55
    11 GFF7414 no description no 0.54
    12 GFF706 hypothetical protein no 0.54
    13 GFF4072 hypothetical protein no 0.53
    14 GFF6425 no description no 0.53
    15 GFF6075 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB no 0.53
    16 GFF2154 twitching motility protein PilJ no 0.53
    17 GFF33 Type IV pilus biogenesis protein PilZ no 0.53
    18 GFF5981 COGs COG3558 no 0.52
    19 GFF2153 type IV pili signal transduction protein PilI no 0.52
    20 GFF3825 Autolysin sensor kinase (EC 2.7.3.-) no 0.52

    Or look for negative cofitness