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  • Top cofit genes for GFF6413 from Variovorax sp. SCN45

    Histidine ABC transporter, substrate-binding protein
    SEED: Urea carboxylase-related ABC transporter, periplasmic substrate-binding protein
    KEGG: sulfonate/nitrate/taurine transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF156 Glycosyl transferase, group 2 family no 0.56
    2 GFF3503 Subclass B3 beta-lactamase (EC 3.5.2.6) no 0.55
    3 GFF4079 Cytochrome c4 no 0.54
    4 GFF3335 no description no 0.53
    5 GFF5917 T6SS component TssB (ImpB/VipA) no 0.52
    6 GFF2089 CDP-alcohol phosphatidyltransferase family protein no 0.52
    7 GFF7304 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) no 0.51
    8 GFF1882 2-oxoglutarate/2-oxoacid ferredoxin oxidoreductase, beta subunit (EC 1.2.7.-) no 0.51
    9 GFF4572 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.51
    10 GFF2827 Bacterioferritin (EC 1.16.3.1) no 0.51
    11 GFF3912 Ferrous iron transport permease EfeU no 0.50
    12 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA no 0.50
    13 GFF4870 Glycosidases no 0.49
    14 GFF319 EXTRACYTOPLASMIC FUNCTION ALTERNATIVE SIGMA FACTOR no 0.48
    15 GFF1044 hypothetical protein no 0.48
    16 GFF7284 Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) no 0.48
    17 GFF420 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) no 0.48
    18 GFF4262 hypothetical protein no 0.47
    19 GFF1909 FIG00537389: hypothetical protein no 0.47
    20 GFF5906 Nitrilase (EC 3.5.5.7) no 0.47

    Or look for negative cofitness