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  • Top cofit genes for GFF6409 from Variovorax sp. SCN45

    Histidine ammonia-lyase (EC 4.3.1.3)
    SEED: Histidine ammonia-lyase (EC 4.3.1.3)
    KEGG: histidine ammonia-lyase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5951 no description no 0.57
    2 GFF4232 no description no 0.53
    3 GFF2207 Flp pilus assembly protein TadB no 0.53
    4 GFF6133 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.52
    5 GFF3553 FOG: TPR repeat no 0.50
    6 GFF4007 Glutamate carboxypeptidase (EC 3.4.17.11) no 0.50
    7 GFF4421 Conjugative transfer protein TrbF no 0.49
    8 GFF6824 Pyruvate:Oxaloacetate transcarboxylase domain protein no 0.48
    9 GFF4218 no description no 0.48
    10 GFF1503 Dihydrofolate reductase homolog no 0.47
    11 GFF6270 Uncharacterized MFS-type transporter no 0.47
    12 GFF3399 Benzoate--CoA ligase (EC 6.2.1.25) no 0.47
    13 GFF1790 Hydroxymethylpyrimidine ABC transporter, ATPase component no 0.46
    14 GFF2210 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly no 0.46
    15 GFF3904 Probable signal peptide protein no 0.46
    16 GFF1752 Cysteine dioxygenase (EC 1.13.11.20) 0.26 0.46
    17 GFF1596 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) no 0.46
    18 GFF1975 hypothetical protein no 0.45
    19 GFF4537 Tetrapartite efflux system, inner membrane component FusBC-like 0.15 0.45
    20 GFF1968 Hydroxymethylpyrimidine ABC transporter, transmembrane component no 0.45

    Or look for negative cofitness