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  • Top cofit genes for GFF6404 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    SEED: Amino acid ABC transporter, permease protein
    KEGG: polar amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5937 T6SS component TssG (ImpH/VasB) no 0.62
    2 GFF260 FIG00931356: hypothetical protein no 0.51
    3 GFF5456 L-threonate/D-erythronate transcriptional regulator, GntR family no 0.49
    4 GFF6986 hypothetical protein no 0.49
    5 GFF6851 no description no 0.48
    6 GFF5542 no description no 0.48
    7 GFF4579 putative oxidoreductase, nitronate monooxygenase family no 0.47
    8 GFF6239 Catalase KatE-intracellular protease (EC 1.11.1.6) no 0.47
    9 GFF5308 Epoxide hydrolase (EC 3.3.2.9) no 0.46
    10 GFF5847 putative membrane protein no 0.46
    11 GFF5403 no description no 0.46
    12 GFF7109 BUG/TctC family periplasmic protein no 0.46
    13 GFF5583 Transcriptional regulator PA0181, LysR family no 0.46
    14 GFF4190 no description no 0.44
    15 GFF3429 Transcriptional regulator, AraC family 0.21 0.43
    16 GFF6836 hypothetical protein no 0.43
    17 GFF4578 Electron transfer flavoprotein, alpha subunit no 0.42
    18 GFF5515 Lysophospholipase (EC 3.1.1.5) no 0.42
    19 GFF5433 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.41
    20 GFF3989 PUTATIVE 4-HYDROXYBENZOYL-COA THIOESTERASE PROTEIN( EC:3.1.2.23 ) no 0.41

    Or look for negative cofitness