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  • Top cofit genes for GFF6377 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Extracellular ligand-binding receptor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1943 DNA polymerase III alpha subunit (EC 2.7.7.7) no 0.50
    2 GFF7311 Putative transmembrane lipoprotein 0.22 0.48
    3 GFF5275 Various polyols ABC transporter, ATP-binding protein 0.32 0.47
    4 GFF4251 no description no 0.46
    5 GFF3388 Transcriptional regulator, AcrR family no 0.44
    6 GFF2113 NADH dehydrogenase (EC 1.6.99.3) no 0.44
    7 GFF3421 Acetoacetyl-CoA synthetase (EC 6.2.1.16) no 0.42
    8 GFF2853 DNA-binding protein HU-beta no 0.42
    9 GFF1755 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.42
    10 GFF6861 no description no 0.42
    11 GFF4345 hypothetical protein no 0.42
    12 GFF4587 Dienelactone hydrolase family protein no 0.41
    13 GFF7328 no description no 0.41
    14 GFF1831 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 3 no 0.40
    15 GFF4824 Transcriptional regulator, AraC family no 0.40
    16 GFF6631 hypothetical protein no 0.40
    17 GFF1871 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) no 0.40
    18 GFF1930 RTX toxin transporter, ATP-binding protein no 0.40
    19 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.39
    20 GFF7278 Transposase no 0.39

    Or look for negative cofitness