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  • Top cofit genes for GFF6357 from Variovorax sp. SCN45

    T6SS forkhead associated domain protein ImpI/VasC
    SEED: Uncharacterized protein ImpI/VasC
    KEGG: FHA domain-containing protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3982 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) no 0.60
    2 GFF1612 no description no 0.60
    3 GFF5506 Transcriptional regulator Bmul_5214, AsnC family no 0.55
    4 GFF1710 hypothetical protein no 0.55
    5 GFF5756 KEGG: flagellar protein FliT no 0.55
    6 GFF6527 Transcriptional regulator, AcrR family no 0.55
    7 GFF4344 acyl-CoA dehydrogenase, putative phosphotransferase no 0.52
    8 GFF3981 ABC-type branched-chain amino acid transport systems, periplasmic component no 0.51
    9 GFF6517 Cation transport protein ChaC no 0.50
    10 GFF6549 no description no 0.49
    11 GFF1729 HIPA PROTEIN no 0.49
    12 GFF2969 acyl-CoA synthetase (NDP forming type) no 0.49
    13 GFF3508 Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system no 0.48
    14 GFF1916 YpfJ protein, zinc metalloprotease superfamily no 0.48
    15 GFF1923 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.48
    16 GFF4309 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.48
    17 GFF922 hypothetical protein no 0.48
    18 GFF787 hypothetical protein no 0.47
    19 GFF6437 no description no 0.47
    20 GFF1743 Transcriptional regulator, LysR family no 0.47

    Or look for negative cofitness