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  • Top cofit genes for GFF6242 from Variovorax sp. SCN45

    ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
    SEED: ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD
    KEGG: DNA ligase (ATP)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6653 Aminotransferase, class III no 0.58
    2 GFF3416 Alkanesulfonates transport system permease protein no 0.57
    3 GFF6997 Flagellar basal-body rod protein FlgC no 0.54
    4 GFF2680 Protein of unknown function DUF1058 no 0.54
    5 GFF6354 T6SS component TssK (ImpJ/VasE) no 0.52
    6 GFF2838 hypothetical protein no 0.52
    7 GFF3963 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) no 0.52
    8 GFF7266 L-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.16) no 0.52
    9 GFF2173 no description no 0.52
    10 GFF2 Transcription accessory protein (S1 RNA-binding domain) no 0.51
    11 GFF5805 Putative transmembrane protein no 0.51
    12 GFF1346 hypothetical protein no 0.51
    13 GFF4469 Cell division protein FtsA no 0.51
    14 GFF3451 no description no 0.51
    15 GFF2120 Type IV fimbrial biogenesis protein PilX no 0.50
    16 GFF3251 SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC 2.1.1.182) no 0.50
    17 GFF136 Uncharacterized MFS-type transporter no 0.49
    18 GFF3219 hypothetical protein no 0.49
    19 GFF5142 no description no 0.49
    20 GFF3506 Superoxide dismutase [Fe] (EC 1.15.1.1) no 0.49

    Or look for negative cofitness