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    • Top cofit genes for GFF6223 from Variovorax sp. SCN45

    T6SS outer membrane component TssL (ImpK/VasF) / OmpA/MotB domain
    SEED: Outer membrane protein ImpK/VasF, OmpA/MotB domain
    KEGG: type VI secretion system protein ImpK

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1415 Lactoylglutathione lyase and related lyases no 0.53
    2 GFF6029 BUG/TctC family periplasmic protein 0.38 0.52
    3 GFF4999 hypothetical protein no 0.52
    4 GFF1060 Hydroxymethylpyrimidine ABC transporter, transmembrane component no 0.50
    5 GFF1307 Homoserine dehydrogenase (EC 1.1.1.3) no 0.49
    6 GFF3724 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.48
    7 GFF1255 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) no 0.47
    8 GFF574 Tol-Pal system-associated acyl-CoA thioesterase no 0.47
    9 GFF1013 hypothetical protein no 0.46
    10 GFF4921 hypothetical protein no 0.46
    11 GFF5617 Coenzyme A ligase no 0.46
    12 GFF2208 Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily no 0.46
    13 GFF3940 putative membrane protein no 0.46
    14 GFF7263 Malate dehydrogenase (EC 1.1.1.37) no 0.45
    15 GFF2502 O-antigen acetylase no 0.45
    16 GFF5365 Outer membrane stress sensor protease DegS no 0.45
    17 GFF5593 no description no 0.44
    18 GFF6959 Putative analog of CcoH, COG3198 no 0.44
    19 GFF612 hypothetical protein no 0.44
    20 GFF2986 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) no 0.43

    Or look for negative cofitness