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  • Top cofit genes for PS417_03105 from Pseudomonas simiae WCS417

    secretin
    SEED: Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly
    KEGG: pilus assembly protein CpaC

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_03050 hypothetical protein 0.54 0.49
    2 PS417_03095 ATPase 0.91 0.47
    3 PS417_03125 potassium ABC transporter ATPase 0.78 0.42
    4 PS417_03070 LuxR family transcriptional regulator 0.43 0.42
    5 PS417_03060 pilus assembly protein TadE 0.59 0.41
    6 PS417_03895 methyltransferase 0.59 0.36
    7 PS417_03075 hypothetical protein no 0.36
    8 PS417_03090 type II secretion system protein F 0.92 0.34
    9 PS417_16160 ABC transporter substrate-binding protein no 0.34
    10 PS417_03065 peptidase A24 0.26 0.33
    11 PS417_06365 RNA polymerase sigma factor 0.18 0.32
    12 PS417_15565 transketolase no 0.32
    13 PS417_01895 poly(R)-hydroxyalkanoic acid synthase no 0.31
    14 PS417_24885 transcriptional regulator no 0.31
    15 PS417_16370 chemotaxis protein CheY 0.19 0.30
    16 PS417_18870 hypothetical protein no 0.29
    17 PS417_03910 pilus assembly protein no 0.29
    18 PS417_24820 ethanolamine ammonia-lyase 0.50 0.29
    19 PS417_10720 chemotaxis protein CheY 0.19 0.29
    20 PS417_28265 pyridoxamine kinase no 0.28

    Or look for negative cofitness