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  • Top cofit genes for GFF6077 from Variovorax sp. SCN45

    G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27)
    SEED: G:T/U mismatch-specific uracil/thymine DNA-glycosylase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1300 hypothetical protein 0.41 0.62
    2 GFF5855 T1SS secreted agglutinin RTX no 0.62
    3 GFF5288 Uncharacterized protein PA4513 no 0.61
    4 GFF5759 Flagellar transcriptional activator FlhD no 0.60
    5 GFF2163 hypothetical protein no 0.60
    6 GFF5259 Na+/solute symporter no 0.57
    7 GFF1530 Nucleoside-diphosphate-sugar epimerases no 0.57
    8 GFF2521 FIG00931781: hypothetical protein no 0.56
    9 GFF5067 Transcriptional regulator, LysR family no 0.55
    10 GFF6936 ABC transporter, ATP-binding protein 0.22 0.55
    11 GFF5862 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.55
    12 GFF1280 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.54
    13 GFF2830 Uncharacterized protein CC_3061 no 0.54
    14 GFF1319 no description no 0.54
    15 GFF456 Transcriptional regulator, AraC family no 0.53
    16 GFF865 hypothetical protein no 0.53
    17 GFF5314 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ no 0.52
    18 GFF256 Twitching motility protein PilT no 0.51
    19 GFF356 L-asparaginase (EC 3.5.1.1) no 0.51
    20 GFF5052 FAD-dependent oxidoreductase SPO0682 no 0.50

    Or look for negative cofitness