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  • Top cofit genes for GFF5995 from Variovorax sp. SCN45

    LysR family transcriptional regulator STM3121
    SEED: LysR family transcriptional regulator STM3121

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4393 Uncharacterized ABC1 family protein XCC_1720 no 0.62
    2 GFF1849 FIG00347667: hypothetical protein no 0.58
    3 GFF7340 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.58
    4 GFF2225 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.54
    5 GFF72 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.53
    6 GFF7018 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.52
    7 GFF5969 Transcriptional regulator, GntR family no 0.51
    8 GFF6049 Acyl-CoA dehydrogenase family protein no 0.51
    9 GFF803 MutT/Nudix family protein 0.28 0.51
    10 GFF2464 Sensory histidine kinase BaeS no 0.51
    11 GFF3452 hypothetical protein no 0.49
    12 GFF5709 no description no 0.49
    13 GFF3667 Uncharacterized MFS-type transporter no 0.49
    14 GFF379 Ribonuclease HII (EC 3.1.26.4) 0.50 0.49
    15 GFF4645 GGDEF domain protein no 0.48
    16 GFF6173 Na(+) H(+) antiporter subunit A / Na(+) H(+) antiporter subunit B no 0.48
    17 GFF4726 hypothetical protein no 0.47
    18 GFF6813 no description no 0.47
    19 GFF6809 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.46
    20 GFF2649 putative autotransporter protein no 0.46

    Or look for negative cofitness