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  • Top cofit genes for GFF5990 from Variovorax sp. SCN45

    RND efflux system, inner membrane transporter
    SEED: RND efflux system, inner membrane transporter CmeB
    KEGG: hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1623 Glycerol-3-phosphate transporter 0.27 0.61
    2 GFF1485 Transcriptional regulator, AraC family no 0.52
    3 GFF2211 Flp pilus assembly protein RcpC/CpaB no 0.52
    4 GFF1750 BUG/TctC family periplasmic protein no 0.52
    5 GFF1936 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) 0.39 0.50
    6 GFF4605 FIG00537210: hypothetical protein no 0.49
    7 GFF6203 UDP-glucose 4-epimerase (EC 5.1.3.2) no 0.49
    8 GFF5664 hypothetical protein no 0.49
    9 GFF813 Transcriptional regulator PA0877, LysR family no 0.49
    10 GFF5339 Phospholipid ABC transporter-binding protein MlaB no 0.48
    11 GFF4911 Nudix-like NDP and NTP phosphohydrolase NudJ no 0.47
    12 GFF4179 hypothetical protein no 0.47
    13 GFF6693 Two-component transcriptional response regulator, LuxR family no 0.46
    14 GFF3782 hypothetical protein no 0.46
    15 GFF3725 RND efflux system, inner membrane transporter 0.64 0.46
    16 GFF5764 hypothetical protein 0.23 0.46
    17 GFF5596 Spermidine/putrescine import ABC transporter permease protein PotB (TC 3.A.1.11.1) no 0.45
    18 GFF1714 no description no 0.45
    19 GFF5007 probable membrane protein STY4873 no 0.45
    20 GFF3557 hypothetical protein no 0.45

    Or look for negative cofitness