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  • Top cofit genes for GFF5978 from Variovorax sp. SCN45

    Nucleoside 2-deoxyribosyltransferase
    SEED: Nucleoside 2-deoxyribosyltransferase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7228 Ribonucleotide reductase of class II (coenzyme B12-dependent) (EC 1.17.4.1) no 0.53
    2 GFF1937 Hemolysins and related proteins containing CBS domains no 0.53
    3 GFF7109 BUG/TctC family periplasmic protein no 0.52
    4 GFF2326 Transcriptional regulator, LysR family no 0.52
    5 GFF1525 RNA polymerase ECF-type sigma factor no 0.51
    6 GFF2415 Trans-aconitate 2-methyltransferase (EC 2.1.1.144) no 0.51
    7 GFF3657 Mlr5572 protein no 0.49
    8 GFF7126 KEGG: transposase no 0.49
    9 GFF4868 Type IV secretory pathway, VirD2 components (relaxase) no 0.49
    10 GFF5688 Transcriptional regulator, LysR family no 0.49
    11 GFF6163 hypothetical protein no 0.48
    12 GFF6911 Transcriptional regulator, LacI family no 0.48
    13 GFF4013 hypothetical protein no 0.48
    14 GFF3587 KEGG: putative spermidine/putrescine transport system ATP-binding protein no 0.47
    15 GFF7214 Peptidase M20D, amidohydrolase no 0.47
    16 GFF1310 hypothetical protein no 0.47
    17 GFF757 hypothetical protein no 0.46
    18 GFF7000 Flagellar L-ring protein FlgH no 0.45
    19 GFF1783 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO 0.25 0.45
    20 GFF3567 YihE protein, required for LPS synthesis no 0.45

    Or look for negative cofitness