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  • Top cofit genes for GFF5947 from Variovorax sp. SCN45

    Large extracellular alpha-helical protein
    SEED: Large extracellular alpha-helical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5286 Ferrichrome-iron receptor no 0.57
    2 GFF2505 hypothetical protein no 0.54
    3 GFF2802 DUF1176 domain-containing protein no 0.54
    4 GFF5288 Uncharacterized protein PA4513 no 0.53
    5 GFF6286 Probable signal peptide protein no 0.51
    6 GFF3917 Ferrous iron transporter FeoB 0.34 0.50
    7 GFF5392 no description no 0.50
    8 GFF4769 Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system no 0.49
    9 GFF1847 Nucleoside ABC transporter, substrate-binding protein no 0.48
    10 GFF6659 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) no 0.48
    11 GFF5855 T1SS secreted agglutinin RTX no 0.48
    12 GFF6680 Aspartate ammonia-lyase (EC 4.3.1.1) no 0.47
    13 GFF6034 Replication-associated recombination protein RarA 0.43 0.47
    14 GFF5429 Iron(III) dicitrate transport protein FecA no 0.47
    15 GFF3994 hypothetical protein no 0.47
    16 GFF857 no description no 0.47
    17 GFF6678 Putative inner membrane protein no 0.47
    18 GFF6162 Dihydrodipicolinate synthase family protein RB7999 no 0.47
    19 GFF531 hypothetical protein no 0.47
    20 GFF1116 Membrane-bound lytic murein transglycosylase D no 0.47

    Or look for negative cofitness