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  • Top cofit genes for GFF5936 from Variovorax sp. SCN45

    T6SS AAA+ chaperone ClpV (TssH)
    SEED: ClpB protein
    KEGG: type VI secretion system protein VasG

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3994 hypothetical protein no 0.62
    2 GFF6844 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system no 0.57
    3 GFF6903 Transcriptional regulator, LysR family 0.61 0.55
    4 GFF58 Tyrosine-protein kinase (EC 2.7.10.2) 0.32 0.54
    5 GFF4597 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.53
    6 GFF3956 no description no 0.52
    7 GFF1320 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.51
    8 GFF2490 Transcriptional regulator, LysR family 0.53 0.51
    9 GFF3249 Guanyl-specific ribonuclease (EC 3.1.27.3) no 0.49
    10 GFF6717 hypothetical protein no 0.49
    11 GFF6548 hypothetical protein 0.20 0.49
    12 GFF6148 hypothetical protein no 0.49
    13 GFF3007 hypothetical protein no 0.48
    14 GFF6733 hypothetical protein no 0.48
    15 GFF5287 FIG00455092: hypothetical protein no 0.48
    16 GFF7121 CDP-6-deoxy-delta-3,4-glucoseen reductase-like no 0.47
    17 GFF3772 Arginase (EC 3.5.3.1) 0.22 0.47
    18 GFF7152 no description no 0.47
    19 GFF4046 Cobalt/zinc/cadmium efflux RND transporter, transmembrane protein CzcA no 0.47
    20 GFF3995 hypothetical protein no 0.47

    Or look for negative cofitness