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  • Top cofit genes for GFF5919 from Variovorax sp. SCN45

    KEGG: type VI secretion system secreted protein Hcp

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3495 ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.62
    2 GFF7115 hypothetical protein no 0.60
    3 GFF4360 no description no 0.60
    4 GFF1190 Glycine oxidase ThiO (EC 1.4.3.19) no 0.59
    5 GFF109 Protein lysine acetyltransferase Pat (EC 2.3.1.-) no 0.57
    6 GFF2189 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) no 0.57
    7 GFF1211 D-aminopeptidase (EC 3.4.11.19) no 0.57
    8 GFF1782 integral membrane sensor signal transduction histidine kinase no 0.57
    9 GFF1520 Transcriptional regulator, IclR family no 0.57
    10 GFF6195 ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) no 0.56
    11 GFF3755 Transcriptional regulator, GntR family no 0.56
    12 GFF7059 Zinc uptake regulation protein Zur no 0.56
    13 GFF6832 DnaJ-class molecular chaperone CbpA no 0.56
    14 GFF6159 carbon monoxide dehydrogenase G protein no 0.55
    15 GFF1792 Transcriptional regulator, IclR family no 0.55
    16 GFF473 Cytochrome c551/c552 no 0.54
    17 GFF6145 2-aminoethylphosphonate utilization transcriptional regulator, GntR family no 0.54
    18 GFF2967 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.54
    19 GFF5186 hypothetical protein no 0.54
    20 GFF475 Acetyl-CoA synthetase (EC 6.2.1.1) no 0.53

    Or look for negative cofitness