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  • Top cofit genes for GFF5915 from Variovorax sp. SCN45

    T6SS secretion lipoprotein TssJ (VasD)
    SEED: Type VI secretion lipoprotein/VasD
    KEGG: type VI secretion system protein VasD

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3478 Cytochrome c peroxidase (EC 1.11.1.5) no 0.48
    2 GFF3354 FIG00537998: hypothetical protein no 0.47
    3 GFF3430 Transcriptional regulator, LysR family no 0.45
    4 GFF6394 Lipase precursor (EC 3.1.1.3) no 0.44
    5 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) no 0.43
    6 GFF5289 hypothetical protein no 0.43
    7 GFF7012 Taurine ABC transporter, ATP-binding protein TauB no 0.42
    8 GFF1632 RNA polymerase ECF-type sigma factor no 0.42
    9 GFF3440 FIG00460300: hypothetical protein no 0.42
    10 GFF5739 Flagellar biosynthesis protein FliQ no 0.42
    11 GFF6379 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.41
    12 GFF4812 no description no 0.41
    13 GFF1933 Alkaline phosphatase (EC 3.1.3.1) no 0.41
    14 GFF3822 RND efflux system, membrane fusion protein no 0.40
    15 GFF2799 Molybdopterin-guanine dinucleotide biosynthesis protein MobB no 0.40
    16 GFF6480 hypothetical protein no 0.40
    17 GFF1227 no description no 0.39
    18 GFF175 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.39
    19 GFF6056 Transcriptional regulator, LacI family no 0.39
    20 GFF2424 ABC transporter, permease protein 1 (cluster 1, maltose/g3p/polyamine/iron) no 0.39

    Or look for negative cofitness