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  • Top cofit genes for GFF5904 from Variovorax sp. SCN45

    Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
    SEED: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3616 2-hydroxychromene-2-carboxylate isomerase family protein no 0.53
    2 GFF2160 Aspartate carbamoyltransferase (EC 2.1.3.2) no 0.49
    3 GFF2720 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.45
    4 GFF1749 Cystathionine beta-lyase (EC 4.4.1.8) no 0.43
    5 GFF1338 ABC transporter, permease protein 1 RSc1751 no 0.43
    6 GFF1788 hypothetical protein no 0.42
    7 GFF1815 Uricase (urate oxidase) (EC 1.7.3.3) no 0.42
    8 GFF3517 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) no 0.42
    9 GFF1048 Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme no 0.41
    10 GFF3696 mRNA 3-end processing factor no 0.41
    11 GFF3619 no description no 0.41
    12 GFF4710 MutT/Nudix family protein no 0.41
    13 GFF5985 dicarboxylic acid transporter PcaT 0.31 0.41
    14 GFF399 3'-to-5' exoribonuclease RNase R no 0.40
    15 GFF3615 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.40
    16 GFF6868 SAM-dependent methyltransferase no 0.40
    17 GFF3797 Ammonia monooxygenase 0.46 0.40
    18 GFF3621 Magnesium and cobalt transport protein CorA no 0.40
    19 GFF424 Cobalamin synthase (EC 2.7.8.26) 0.48 0.40
    20 GFF6632 no description no 0.40

    Or look for negative cofitness