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  • Top cofit genes for GFF59 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

    Sugar diacid utilization regulator SdaR
    SEED: Sugar diacid utilization regulator SdaR
    KEGG: carbohydrate diacid regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2594 putative collagenase no 0.54
    2 GFF258 Uridine phosphorylase (EC 2.4.2.3) no 0.49
    3 GFF132 Type IV fimbrial assembly, ATPase PilB no 0.49
    4 GFF101 ABC-type multidrug transport system, ATPase component no 0.49
    5 GFF1375 hypothetical protein no 0.49
    6 GFF1381 Gene D protein 0.63 0.49
    7 GFF3403 NAD-dependent protein deacetylase of SIR2 family no 0.49
    8 GFF673 Biotin synthesis protein BioC 0.48 0.48
    9 GFF1733 PTS system, fructose-specific IIB component (EC 2.7.1.69) / PTS system, fructose-specific IIC component (EC 2.7.1.69) no 0.48
    10 GFF3012 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) no 0.47
    11 GFF689 Endonuclease/Exonuclease/phosphatase family protein no 0.47
    12 GFF627 Type IV pilus biogenesis protein PilP 0.51 0.47
    13 GFF1674 Universal stress protein C no 0.47
    14 GFF1528 PTS system, tagatose-specific IIA-TPr component (EC 2.7.1.69) no 0.47
    15 GFF1895 Nucleotidase YfbR, HD superfamily no 0.47
    16 GFF2240 Alpha-D-glucose-1-phosphatase 0.13 0.46
    17 GFF2268 L-rhamnose-proton symporter 0.51 0.46
    18 GFF2413 FIG021952: putative membrane protein 0.24 0.46
    19 GFF1622 Putative amidohydrolase 0.35 0.46
    20 GFF3498 Excinuclease cho (excinuclease ABC alternative C subunit) no 0.46

    Or look for negative cofitness