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  • Top cofit genes for GFF5862 from Variovorax sp. SCN45

    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1300 hypothetical protein no 0.68
    2 GFF2163 hypothetical protein no 0.63
    3 GFF3851 Uncharacterized MFS-type transporter no 0.62
    4 GFF3456 Possible regulatory protein similar to urea ABC transporter, substrate binding protein no 0.62
    5 GFF6873 Aminotransferase, DegT/DnrJ/EryC1/StrS family no 0.59
    6 GFF2504 Cell division protein ZapD no 0.57
    7 GFF5687 FIG01027591: hypothetical protein no 0.57
    8 GFF421 hypothetical protein no 0.57
    9 GFF2830 Uncharacterized protein CC_3061 no 0.57
    10 GFF4161 hypothetical protein no 0.56
    11 GFF1280 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.55
    12 GFF266 RND efflux system, inner membrane transporter no 0.55
    13 GFF6077 G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27) no 0.55
    14 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) no 0.54
    15 GFF2790 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) no 0.54
    16 GFF5510 protein of unknown function DUF306, Meta and HslJ no 0.54
    17 GFF7158 Pirin no 0.54
    18 GFF2263 putative membrane protein no 0.53
    19 GFF3833 FIG01056426: hypothetical protein no 0.53
    20 GFF5245 FIG00771430: hypothetical protein no 0.53

    Or look for negative cofitness