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Gene
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Cofit
Protein
Homologs
Top cofit genes for GFF5862 from
Variovorax sp. SCN45
KEGG: RNA polymerase sigma-70 factor, ECF subfamily
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF1300
hypothetical protein
no
0.68
2
GFF2163
hypothetical protein
no
0.63
3
GFF3851
Uncharacterized MFS-type transporter
no
0.62
4
GFF3456
Possible regulatory protein similar to urea ABC transporter, substrate binding protein
no
0.62
5
GFF6873
Aminotransferase, DegT/DnrJ/EryC1/StrS family
no
0.59
6
GFF2504
Cell division protein ZapD
no
0.57
7
GFF5687
FIG01027591: hypothetical protein
no
0.57
8
GFF421
hypothetical protein
no
0.57
9
GFF2830
Uncharacterized protein CC_3061
no
0.57
10
GFF4161
hypothetical protein
no
0.56
11
GFF1280
ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
no
0.55
12
GFF266
RND efflux system, inner membrane transporter
no
0.55
13
GFF6077
G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27)
no
0.55
14
GFF5235
General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD)
no
0.54
15
GFF2790
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
no
0.54
16
GFF5510
protein of unknown function DUF306, Meta and HslJ
no
0.54
17
GFF7158
Pirin
no
0.54
18
GFF2263
putative membrane protein
no
0.53
19
GFF3833
FIG01056426: hypothetical protein
no
0.53
20
GFF5245
FIG00771430: hypothetical protein
no
0.53
Or look for
negative cofitness