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  • Top cofit genes for GFF5855 from Variovorax sp. SCN45

    T1SS secreted agglutinin RTX
    SEED: T1SS secreted agglutinin RTX

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6392 hypothetical protein no 0.70
    2 GFF5860 no description no 0.69
    3 GFF5856 Outer membrane receptor proteins, likely involved in siderophore uptake no 0.64
    4 GFF1313 Cellulose synthase operon protein C no 0.63
    5 GFF3906 Acyl-CoA dehydrogenase no 0.62
    6 GFF6077 G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27) no 0.62
    7 GFF2521 FIG00931781: hypothetical protein no 0.60
    8 GFF5429 Iron(III) dicitrate transport protein FecA no 0.59
    9 GFF3910 MORN repeat family protein no 0.59
    10 GFF1316 Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12) no 0.59
    11 GFF3893 hypothetical protein no 0.59
    12 GFF4886 hypothetical protein no 0.59
    13 GFF266 RND efflux system, inner membrane transporter no 0.58
    14 GFF5817 Two-component system sensor histidine kinase no 0.58
    15 GFF5052 FAD-dependent oxidoreductase SPO0682 no 0.57
    16 GFF3938 Intracellular protease no 0.57
    17 GFF1309 Phosphoglucomutase (EC 5.4.2.2) no 0.57
    18 GFF1300 hypothetical protein no 0.57
    19 GFF4406 Alkane-1 monooxygenase (EC 1.14.15.3) no 0.56
    20 GFF3836 Cyclic beta-1,2-glucan synthase (EC 2.4.1.-) no 0.56

    Or look for negative cofitness