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Cofit
Protein
Homologs
Top cofit genes for GFF5855 from
Variovorax sp. SCN45
T1SS secreted agglutinin RTX
SEED: T1SS secreted agglutinin RTX
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF6392
hypothetical protein
no
0.70
2
GFF5860
no description
no
0.69
3
GFF5856
Outer membrane receptor proteins, likely involved in siderophore uptake
no
0.64
4
GFF1313
Cellulose synthase operon protein C
no
0.63
5
GFF3906
Acyl-CoA dehydrogenase
no
0.62
6
GFF6077
G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27)
no
0.62
7
GFF2521
FIG00931781: hypothetical protein
no
0.60
8
GFF5429
Iron(III) dicitrate transport protein FecA
no
0.59
9
GFF3910
MORN repeat family protein
no
0.59
10
GFF1316
Cellulose synthase catalytic subunit [UDP-forming] (EC 2.4.1.12)
no
0.59
11
GFF3893
hypothetical protein
no
0.59
12
GFF4886
hypothetical protein
no
0.59
13
GFF266
RND efflux system, inner membrane transporter
no
0.58
14
GFF5817
Two-component system sensor histidine kinase
no
0.58
15
GFF5052
FAD-dependent oxidoreductase SPO0682
no
0.57
16
GFF3938
Intracellular protease
no
0.57
17
GFF1309
Phosphoglucomutase (EC 5.4.2.2)
no
0.57
18
GFF1300
hypothetical protein
no
0.57
19
GFF4406
Alkane-1 monooxygenase (EC 1.14.15.3)
no
0.56
20
GFF3836
Cyclic beta-1,2-glucan synthase (EC 2.4.1.-)
no
0.56
Or look for
negative cofitness