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  • Top cofit genes for GFF5854 from Variovorax sp. SCN45

    Type I secretion system, outer membrane component LapE

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF883 2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57) no 0.61
    2 GFF2199 Type I secretion outer membrane protein, TolC family no 0.61
    3 GFF4612 Short-chain dehydrogenase/reductase SDR no 0.59
    4 GFF1651 Transcriptional regulator, AcrR family no 0.59
    5 GFF1855 no description no 0.57
    6 GFF6521 Auxin efflux carrier family protein no 0.57
    7 GFF2074 hypothetical protein no 0.55
    8 GFF1957 no description no 0.55
    9 GFF5689 Oxidoreductase, 2OG-Fe(II) oxygenase family no 0.52
    10 GFF2221 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) no 0.52
    11 GFF1684 no description no 0.52
    12 GFF926 Transcriptional regulator, AcrR family no 0.51
    13 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.51
    14 GFF1536 BUG/TctC family periplasmic protein no 0.51
    15 GFF6074 Tripartite tricarboxylate transporter TctB family no 0.51
    16 GFF5296 putative iron-regulated membrane protein no 0.50
    17 GFF5288 Uncharacterized protein PA4513 no 0.50
    18 GFF3710 Lactoylglutathione lyase and related lyases no 0.50
    19 GFF2725 Isochorismatase (EC 3.3.2.1) no 0.50
    20 GFF1971 Creatinine amidohydrolase (EC 3.5.2.10) no 0.48

    Or look for negative cofitness