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Cofit
Protein
Homologs
Top cofit genes for GFF5854 from
Variovorax sp. SCN45
Type I secretion system, outer membrane component LapE
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF883
2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57)
no
0.61
2
GFF2199
Type I secretion outer membrane protein, TolC family
no
0.61
3
GFF4612
Short-chain dehydrogenase/reductase SDR
no
0.59
4
GFF1651
Transcriptional regulator, AcrR family
no
0.59
5
GFF1855
no description
no
0.57
6
GFF6521
Auxin efflux carrier family protein
no
0.57
7
GFF2074
hypothetical protein
no
0.55
8
GFF1957
no description
no
0.55
9
GFF5689
Oxidoreductase, 2OG-Fe(II) oxygenase family
no
0.52
10
GFF2221
ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.52
11
GFF1684
no description
no
0.52
12
GFF926
Transcriptional regulator, AcrR family
no
0.51
13
GFF99
KEGG: RNA polymerase sigma-70 factor, ECF subfamily
no
0.51
14
GFF1536
BUG/TctC family periplasmic protein
no
0.51
15
GFF6074
Tripartite tricarboxylate transporter TctB family
no
0.51
16
GFF5296
putative iron-regulated membrane protein
no
0.50
17
GFF5288
Uncharacterized protein PA4513
no
0.50
18
GFF3710
Lactoylglutathione lyase and related lyases
no
0.50
19
GFF2725
Isochorismatase (EC 3.3.2.1)
no
0.50
20
GFF1971
Creatinine amidohydrolase (EC 3.5.2.10)
no
0.48
Or look for
negative cofitness