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  • Top cofit genes for GFF5817 from Variovorax sp. SCN45

    Two-component system sensor histidine kinase
    SEED: Sensor histidine kinase
    KEGG: two-component system, NarL family, sensor kinase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1119 Ribonuclease HI (EC 3.1.26.4) no 0.67
    2 GFF240 Cytosol aminopeptidase PepA (EC 3.4.11.1) no 0.65
    3 GFF5429 Iron(III) dicitrate transport protein FecA no 0.65
    4 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.65
    5 GFF2835 putative TonB-dependent receptor no 0.63
    6 GFF2506 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) no 0.60
    7 GFF531 hypothetical protein no 0.60
    8 GFF1226 Heavy-chain fibroin (Fragment) no 0.60
    9 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) no 0.59
    10 GFF5488 Protein of unknown function Smg no 0.59
    11 GFF1116 Membrane-bound lytic murein transglycosylase D no 0.59
    12 GFF5855 T1SS secreted agglutinin RTX no 0.58
    13 GFF6392 hypothetical protein 0.51 0.57
    14 GFF4886 hypothetical protein no 0.56
    15 GFF2098 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.56
    16 GFF2798 Molybdopterin molybdenumtransferase (EC 2.10.1.1) 0.32 0.56
    17 GFF5776 Gluconokinase (EC 2.7.1.12) no 0.56
    18 GFF4406 Alkane-1 monooxygenase (EC 1.14.15.3) no 0.55
    19 GFF6324 Kup system potassium uptake protein 0.20 0.54
    20 GFF375 hypothetical protein no 0.54

    Or look for negative cofitness