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  • Top cofit genes for GFF5786 from Variovorax sp. SCN45

    Transcriptional regulator, LuxR family
    SEED: Transcriptional regulator, LuxR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2487 Two-component system sensor histidine kinase/response regulator hybrid no 0.56
    2 GFF781 hypothetical protein no 0.54
    3 GFF5980 Cyanate hydratase (EC 4.2.1.104) no 0.54
    4 GFF5607 Sigma-54 activated regulatory protein no 0.52
    5 GFF2902 ABC transporter, substrate-binding protein (cluster 13, osmolytes) / ABC transporter, permease protein (cluster 13, osmolytes) no 0.48
    6 GFF1793 hypothetical protein no 0.48
    7 GFF2584 Sulfate permease no 0.48
    8 GFF676 Aminoglycoside 9-phosphotransferase (EC 2.7.1.-) => APH(9)-I no 0.48
    9 GFF4003 FIGfam005179 no 0.48
    10 GFF7354 1,2-phenylacetyl-CoA epoxidase, subunit B (EC 1.14.13.149) no 0.48
    11 GFF786 Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system no 0.48
    12 GFF6660 Multidrug efflux system MdtABC-TolC, membrane fusion component MdtA no 0.48
    13 GFF3526 hypothetical protein no 0.47
    14 GFF5926 FIG00957260: hypothetical protein no 0.47
    15 GFF6121 FIG003461: hypothetical protein no 0.46
    16 GFF1251 FMNH2-dependent alkanesulfonate monooxygenase (EC 1.14.14.5) no 0.46
    17 GFF2591 Virulence factor mviM no 0.46
    18 GFF4665 no description no 0.46
    19 GFF2448 Acyl-CoA dehydrogenase no 0.46
    20 GFF920 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.46

    Or look for negative cofitness